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Table 1 Elapsed time for TREE2FASTA execution on 1000+ sequence FASTA datasets

From: TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees

Database (edited scheme)

Sequences

Length (bp)

Wall-clock

CPU

tufA (color)

1957

483

1.055

1.025

tufA (color + annotation)

1957

483

1.056

1.040

16S PhytoREF (color)

4191

3379

12.973

12.646

16S PhytoREF (color + annotation)

4191

3379

13.164

12.871

  1. Time reported as wall-clock (= ‘real’) and CPU (‘user’ + ‘sys’). See text for computing system specifications. Length refers to the sequence multiple-alignment length [in base pair (bp)]