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Table 1 Overview of data files/data sets

From: Time-course mass spectrometry data of adipose mesenchymal stem cells acquiring chondrogenic phenotype

Label

Name of data set

File types (file extension)

Data repository and identifier (DOI or accession number)

File 1

Day 1 Ctrl

MS/MS spectra file (.mgf)

ftp://massive.ucsd.edu/MSV000082505/peak/day1ctrl.mgf

File 2

Day 1 Ctrl

Mass spectrometry data (.raw)

ftp://massive.ucsd.edu/MSV000082505/raw/day1ctrl.raw

File 3

Day 1 Ctrl

Peptide data (.mzid)

ftp://massive.ucsd.edu/MSV000082505/result/day1ctrl_peptides_1_1_0.mzid

File 4

ND day 14

MS/MS spectra file (.mgf)

ftp://massive.ucsd.edu/MSV000082505/peak/day14ctrl.mgf

File 5

ND day 14

Mass spectrometry data (.raw)

ftp://massive.ucsd.edu/MSV000082505/raw/day14ctrl.raw

File 6

ND day 14

Peptide data (.mzid)

ftp://massive.ucsd.edu/MSV000082505/result/day14ctrl_peptides_1_1_0.mzid

File 7

ND day 28

MS/MS spectra file (.mgf)

ftp://massive.ucsd.edu/MSV000082505/peak/day28ctrl.mgf

File 8

ND day 28

Mass spectrometry data (.raw)

ftp://massive.ucsd.edu/MSV000082505/raw/day28ctrl.raw

File 9

ND day 28

Peptide data (.mzid)

ftp://massive.ucsd.edu/MSV000082505/result/day28ctrl_peptides_1_1_0.mzid

File 10

CHD day 14

MS/MS spectra file (.mgf)

ftp://massive.ucsd.edu/MSV000082505/peak/day14ctrl.mgf

File 11

CHD day 14

Mass spectrometry data (.raw)

ftp://massive.ucsd.edu/MSV000082505/raw/day14chond.raw

File 12

CHD day 14

Peptide data (.mzid)

ftp://massive.ucsd.edu/MSV000082505/result/day14chond_peptides_1_1_0.mzid

File 13

CHD day 28

MS/MS spectra file (.mgf)

ftp://massive.ucsd.edu/MSV000082505/peak/day28chond.mgf

File 14

CHD day 28

Mass spectrometry data (.raw)

ftp://massive.ucsd.edu/MSV000082505/raw/day28chond.raw

File 15

CHD day 28

Peptide data (.mzid)

ftp://massive.ucsd.edu/MSV000082505/result/day28chond_peptides_1_1_0.mzid

File 16

Day 1 Ctrl

Protein list file (.xlsx)

ftp://massive.ucsd.edu/MSV000082505/updates/2018-07-19_ssanmarina1_eec23ce3/other/Day1_ctrl_proteins.xlsx

File 17

ND day 14

Protein list file (.xlsx)

ftp://massive.ucsd.edu/MSV000082505/updates/2018-07-19_ssanmarina1_eec23ce3/other/Day14_ctrl_proteins.xlsx

File 18

CHD day 14

Protein list file (.xlsx)

ftp://massive.ucsd.edu/MSV000082505/updates/2018-07-19_ssanmarina1_eec23ce3/other/Day14_chondro_proteins.xlsx

File 19

ND day 28

Protein list file (.xlsx)

ftp://massive.ucsd.edu/MSV000082505/updates/2018-07-19_ssanmarina1_eec23ce3/other/Day28_ctrl_proteins.xlsx

File 20

CHD day 28

Protein list file (.xlsx)

ftp://massive.ucsd.edu/MSV000082505/updates/2018-07-19_ssanmarina1_eec23ce3/other/Day28_chondro_proteins.xlsx

File 21

Methods

Methods file (.docx)

ftp://massive.ucsd.edu/MSV000082505/methods/ProteomeXchange%20project%20description_final.docx