Effects of sodium houttuyfonate on transcriptome of Pseudomonas aeruginosa

BMC Research Notes

Table 1 Overview of transcriptome data files

Label	Name of data file/data set	File types (file extension)	Data repository and identifier (DOI or accession number)
Control1	SRR9031329_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808580[accn]
Control2	SRR9031328_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808581[accn]
Control3	SRR9031319_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808590[accn]
Control4	SRR9031318_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808591[accn]
SH1	SRR9031323_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808586[accn]
SH2	SRR9031322_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808587[accn]
SH3	SRR9031321_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808588[accn]
SH4	SRR9031320_1.fq	.fastq	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/SRX5808589[accn]
Gene expression data	GSE133428_All_samples.GeneExpression.FPKM	.txt.gz	https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/query/acc.cgi?acc=GSE133428
Table S1	SH transcriptome-S1.xlsx	.xlsx	https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.8241410.v1
Figure S1	Figure S1	.tif	https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.8241410.v1

The raw RNA-Seq data (.fastq files) are available for download on the SRA [11]. The gene expression data (.txt.gz) are available on the GEO [12]. The additional files including Table S1 and Figure S1 can obtained on Figshare [13]

ISSN: 1756-0500