Table 1 Overview of data files/data sets

Data file 1

Figure 1—Experimental design

png

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3) [16]

Data file 2

Figure 2—Sponge RNA extraction on gel agarose

png

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 3

Figure 3—Bioinformatic pipeline

png

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 4

Scythe_batch

sh

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 5

PE_sickle_prinseq_trimmomatic_batch

sh

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 6

allreads_trinity

.fasta

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 7

getit_bacteria

.pl

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 8

assembly_nobacteria_pass1

.fasta

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 9

assembly_nobacteria_final

.fasta

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data file 10

Extract_reads_from_bam

.sh

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.10001870.v3)

Data set 1

All raw reads from the 20 libraries

.fastq.gz

SRA (SRP150632) https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/sra/?term=SRP150632 [17]