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Table 1 Overview of data files

From: High-content screening image dataset and quantitative image analysis of Salmonella infected human cells

LabelName of data file/data setFile types (file extension)Data repository and identifier (DOI or accession number)
Plate [1,2,3,4,5,6,7] _365nm.zip_DAPI channel, 365 nm excitation wavelength, 16 bit pixel depth confocal fluorescence microscopic images, stacks of 96 well plates (7 files)Image stacks saved in LZW compressed, native ImageJ .zip format that can be opened with ImageJ after renaming the extension from .zip_ to .zipHarvard Dataverse [10]
Plate [1,2,3,4,5,6,7] _488nm.zip_ER tracker channel, 488 nm laser excitation wavelength, 16 bit pixel depth confocal fluorescence microscopic images, stacks of 96 well plates (7 files)Image stacks saved in LZW compressed, native ImageJ .zip format that can be opened with ImageJ after renaming the extension from .zip_ to .zipHarvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plate [1,2,3,4,5,6,7] _561nm.zip_mCherry Salmonella channel, 561 nm laser excitation wavelength, 16 bit pixel depth confocal fluorescence microscopic images, stacks of 96 well plates (7 files)Image stacks saved in LZW compressed, native ImageJ .zip format that can be opened with ImageJ after renaming the extension from .zip_ to .zipHarvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
ST_exp60_confocal_infection_plates.xlsPlate layout including ERT concentrationsMS Excel file (.xls)Harvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plate 2_Thr = 235.tif.zip_Segmented 8 bit pixel depth binary images, stacks of 96 well platesImage stacks saved in LZW compressed, native ImageJ .zip format that can be opened with ImageJ after renaming the extension from .zip_ to .zipHarvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plate 3_Thr = 180.tif.zip_Same as aboveSame as aboveSame as above
Plate 4_Thr228-7275.tif.zip_Same as aboveSame as aboveSame as above
Plate 5_Thr = 270.tif.zip_Same as aboveSame as aboveSame as above
Plate 6_Thr = 197_sizefiltered_250px- = 26um2-.tif.zip_Same as aboveSame as aboveSame as above
Plate 7_Thr = 177_sizefiltered_250px- = 26um2-.tif.zip_Same as aboveSame as aboveSame as above
ImageJ_macro_ijm.txtImageJ macro fileText file (.txt)Harvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Infected_cell_ER_signal_Plate 2–7.zip_Table containing extracted features as a result of image analysisLZW compressed (.zip) Comma Separated Value (.csv) text files that can be opened for further processing with R or MS Excel after renaming the extension from .zip_ to .zip and uncompressHarvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plates 2–3.RR scriptText file (.txt)Harvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plates 4–5.RR scriptText file (.txt)Harvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO
Plates 6–7.RR scriptText file (.txt)Harvard Dataverse https://0-doi-org.brum.beds.ac.uk/10.7910/DVN/FYGHFO