Skip to main content

Table 1 Overview of data sets

From: Sequencing of E. coli strain UTI89 on multiple sequencing platforms

Label

Name of data file/data set

File types

(file extension)

Data repository and identifier (DOI or accession number)

Data set 1

New UTI89 genomic data

XLSX (containing data on FASTQ files)

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.12195663)

Data set 2

Previously published UTI89 genomic data

XLSX (containing data on FASTQ files)

Figshare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.12195675)

Applied Biosystems SOliD 3 (new)

UTI89 – SoliD 3 LMP

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387579 [7]; https://identifiers.org/ncbi/insdc.sra:SRR7517573 [8]; https://identifiers.org/ncbi/insdc.sra:SRR8247388 [9])

Ion Torrent PGM (new)

UTI89/pBAD33 – IonTorrent

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4225380 [11]; https://identifiers.org/ncbi/insdc.sra:SRR7352157 [12])

Pacific Biosciences RSII (XL/C2) (new)

SLC-66 – PacBio XL/C2

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387449 [13]; https://identifiers.org/ncbi/insdc.sra:SRR7517443 [14]; https://identifiers.org/ncbi/insdc.sra:SRR7525090 [15])

Illumina NextSeq 500 (new)

UTI89 – NextSeq 500

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4223297 [16]; https://identifiers.org/ncbi/insdc.sra:SRR7349974 [17])

Oxford Nanopore MinION Mk 1b FLO-MIN106 (R9.4) (new)

UTI89 – MinION R9.4

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387499 [18]; https://identifiers.org/ncbi/insdc.sra:SRR7517493 [19])

Pacific Biosciences RSII (P6-C4) (new)

UTI89 – PacBio P6-C4

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX5058882 [20]; https://identifiers.org/ncbi/insdc.sra:SRX5058883 [21]; https://identifiers.org/ncbi/insdc.sra:SRR8240630 [22]; https://identifiers.org/ncbi/insdc.sra:SRR8240631 [23])

Roche 454 (previous) [4]

UTI89 - 454

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX000179 [24]; https://identifiers.org/ncbi/insdc.sra:SRR000868 [25]; https://identifiers.org/ncbi/insdc.sra:SRR000869 [26]; https://identifiers.org/ncbi/insdc.sra:SRR000870 [27]; https://identifiers.org/ncbi/insdc.sra:SRR000871 [28]; https://identifiers.org/ncbi/insdc.sra:SRR000872 [29]; https://identifiers.org/ncbi/insdc.sra:SRR000873 [30])

Illumina Hiseq 2000 (previous) [5]

UTI89 – HiSeq 2000

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:ERX632843 [31]; https://identifiers.org/ncbi/insdc.sra:ERX632844 [32]; https://identifiers.org/ncbi/insdc.sra:ERR687900 [33]; https://identifiers.org/ncbi/insdc.sra:ERR687901 [34])

Oxford Nanopore MinION R7 (previous) [6]

UTI89 – MinION R7

FASTQ

NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:ERX987748 [35]; https://identifiers.org/ncbi/insdc.sra:ERR908493 [36])

Back to article page

BMC Research Notes

ISSN: 1756-0500

Contact us