Table 1 Description and content of fields associated with each entry of OxDBase database.
From: OxDBase: a database of oxygenases involved in biodegradation
Entry Field | Description |
|---|---|
Name | Wherever possible IUBMB Name or common name of the enzyme |
Category | Chemical nature of substrate of dioxygenase |
Subcategory | Specificity and nature of oxidation of dioxygenase |
Enzyme database | The Enzyme Commissions identification (EC) number, link to the SWISS PROT ENZYME database |
BRENDA database | The EC number and link to the BRENDA Enzyme information system |
KEGG database | Link to molecular interaction network of Kyoto Encyclopedia of Genes and Genomes (KEGG) along with EC number |
UMBBD database | The accession number of University of Minnesota Biocatalysis/biodegradation database |
Reaction | The name and chemical structure of substrate and product |
Synonyms | Popular names other than the IUBMB |
Related genes | Link to the NCBI Entrez-gene database |
Related structures | PDB four letter identification code plus a link to the corresponding information |
PubMed reference | Link to the relevant literature to the PubMed database |