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Table 5 PCR cycling conditions

From: An investigation of horizontal transfer of feed introduced DNA to the aerobic microbiota of the gastrointestinal tract of rats

Primers

Initial Denaturation

Denaturation

Annealing Elongation

Cycles

Terminal Elongation

KanR F and ITSR-Eub R

95°C/5 min

95°C/30 s

54°C/25 s 72°C/70 s

35

72°C/7 min

16S-926 F and GFP R:

95°C/5 min

95°C/30 s

53°C/40 s 72°C/90 s

35

72°C/7 min

16S-Pr.mir-530 F and GFP F

95°C/5 min

95°C/30 s

63°C/25 s 72°C/70 s

35

72°C/7 min

16S

94°C/15 min

94°C/4 min

50°C/45 s 72°C/1 min

5

 

16S (cont.)

 

92°C/45 s

55°C/45 s 72°C/1 min

30

72°C/7 min

13 F-14 F

97°C/5 min

97°C/30 s

50°C/45 s 72°C/1.5 min

30

72°C/7 min

16 F-17 F

97°C/5 min

97°C/30 s

50°C/45 s 72°C/1 min

30

72°C/7 min

E9F-K1

97°C/5 min

97°C/30 s

56°C/45 s 72°C/1.5 min

30

72°C/7 min

Kmup-97ar

97°C/5 min

97°C/30 s

56°C/45 s 72°C/2.5 min

30

72°C/7 min