From: The bench scientist's guide to statistical analysis of RNA-Seq data
Functional annotation | Locus ID | Transcript length | Control RPKM | Treatment RPKM | Fold change | DESeq | edgeR | Individual t-test |
---|---|---|---|---|---|---|---|---|
Light-harvesting complex II CAB protein | Glyma05g25810 | 1100 | 7733.20 ± 783.0 | 4575.86 ± 429.3 | 0.59 | 0.063 | 3.39E-04 * | 0.004 * |
Ubiquitin | Glyma20g27950 | 1540 | 1504.18 ± 149.8 | 2425.15 ± 206.1 | 1.61 | 0.061 | 0.007 * | 0.003 * |
Thioredoxin | Glyma17g37280 | 1134 | 265.49 ± 11.1 | 220.79 ± 17.8 | 0.83 | 0.14 | 0.213 | 0.021 * |
L-ascorbate peroxidase | Glyma11g11460 | 1278 | 84.73 ± 2.6 | 107.98 ± 4.4 | 1.27 | 0.214 | 0.272 | 0.001 * |
Polysaccharide catabolism | Glyma06g45700 | 1831 | 70.47 ± 8.6 | 18.91 ± 9.2 | 0.27 | 2.34E-29 * | 4.48E-19 * | 0.002 * |
Glutaredoxin | Glyma13g30770 | 747 | 11.31 ± 1.4 | 34.68 ± 6.8 | 3.07 | 8.39E-14 * | 1.56E-11 * | 0.004 * |
Protein degradation DER1 like | Glyma04g14250 | 1088 | 5.23 ± 0.2 | 44.52 ± 11.8 | 8.51 | 7.06E-49 * | 8.30E-38 * | 0.005 * |
Lipoxygenase | Glyma03g42500 | 2833 | 2.90 ± 0.4 | 5.64 ± 1.3 | 1.95 | 1.96E-04 * | 2.26E-04 * | 0.027 * |
Starch synthase catalytic domain | Glyma20g36040 | 1954 | 2.84 ± 0.8 | 0.12 ± 0.1 | 0.04 | 1.14E-23 * | 1.60E-36 * | 0.005 * |
WRKY trascription factor | Glyma10g27860 | 1468 | 1.69 ± 0.4 | 70.92 ± 20.80 | 41.97 | 9.23E-121 * | 2.76E-92 * | 0.005 * |