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Table 1 Validation of all differentially expressed GO terms identified by GSEA + MIMGO at each GSEA q -value threshold

From: Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset

GSEA q-value threshold

0.02

0.05

0.1

0.2

number of GO terms

302

452

687

1024

average correlation

0.65

0.67

0.67

0.66

standard deviation

0.25

0.23

0.25

0.25

minimum correlation

−0.16

−0.13

−0.15

−0.19

correlation >0.9

53

91

131

194

correlation <0.1

14

14

28

43

  1. “GSEA q-value threshold” shows the q-value thresholds used in GSEA. “number of GO terms” denotes the total number of differentially expressed GO terms identified at each GSEA q-value threshold. “average correlation” represents the average correlation coefficient between “GSEA + MIMGO” and “> (avg + std)” in Figure 3C for all differentially expressed GO terms identified at each GSEA q-value threshold. “standard deviation” describes the standard deviations of the correlation coefficient for all differentially expressed GO terms identified at each GSEA q-value threshold. “minimum correlation” shows the minimum of the correlation coefficient for all differentially expressed GO terms identified at each GSEA q-value threshold. “correlations >0.9” and “correlations <0.1” show the total numbers of differentially expressed GO terms showing the correlation coefficient over 0.9 and under 0.1, respectively, for all differentially expressed GO terms identified at each GSEA q-value threshold.