GSEA q-value threshold | 0.02 | 0.05 | 0.1 | 0.2 |
|---|
number of GO terms | 302 | 289 | 288 | 286 |
average correlation | 0.65 | 0.72 | .074 | 0.76 |
standard deviation | 0.25 | 0.22 | 0.22 | 0.21 |
minimum correlation | −0.16 | −0.11 | −0.13 | −0.19 |
correlation >0.9 | 53 | 72 | 77 | 82 |
correlation <0.1 | 14 | 5 | 4 | 3 |
- We examined whether the 302 differentially expressed GO terms (0.02_de_GO_terms) identified at a GSEA q-value threshold of 0.02 were also identified at the other GSEA q-value thresholds. “GSEA q-value threshold” shows the q-value thresholds used in GSEA. “number of GO terms” denotes the total number of 0.02_de_GO_terms identified at each GSEA q-value threshold. “average correlation” represents the average correlation coefficient between “GSEA + MIMGO” and “> (avg + std)” in Figure 3C for all 0.02_de_GO_terms identified at each GSEA q-value threshold. “standard deviation” describes the standard deviation of the correlation coefficient for all 0.02_de_GO_terms identified at each GSEA q-value threshold. “minimum correlation” shows the minimum of the correlation coefficient for all 0.02_de_GO_terms identified at each GSEA q-value threshold. “correlation >0.9” and “correlation <0.1” show the total numbers of 0.02_de_GO_terms showing the correlation coefficient over 0.9 and under 0.1, respectively, for all 0.02_de_GO_terms identified at each GSEA q-value threshold.
