Locus | Repeat motif | Primer sequences (5′–3′) | Dye | Temp. annealing (°C) | Panel | Expected product size (bp) | Observed size range (bp) | Population | n | NA | NE | HO | HE | PHW | PIC | GenBank accession number |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RCA1 | (ATAG)10 | F: TGG GAA ATC TCC AAA CCT TCC | VIC | 55 | 1 | 560 | 554–582 | Table farm | 19 | 8 | 4.57 | 0.737 | 0.781 | 0.092 | 0.789 | KP842268 |
R: GGG CTG CCT CAA CAT AAT ACC | Heidehof | 20 | 6 | 4.87 | 0.700 | 0.795 | 0.288 | |||||||||
RCA2 | (AG)32 | F: GTG AAC CTA CTT GCT TGA CTC ACC | 6-FAM | 54 | 1 | 519 | 492–538 | Table farm | 14 | 12 | 6.87 | 0.786 | 0.855 | 0.030 | 0.903 | KP842262 |
R: TGG CCA GTT GAA GAC AGT CTC C | Heidehof | 17 | 14 | 9.63 | 0.529 | 0.896 | 0.0001* | |||||||||
RCA3 | (TAGA)14 | F: AGC AGC CTC CAT AAT AAC ATA AGC | VIC | 50 | 2 | 420 | 398–418 | Table farm | 20 | 5 | 3.37 | 0.700 | 0.704 | 0.756 | 0.708 | KP842266 |
R: AAC TCT TAT CCT AAT CTC ACC TCC | Heidehof | 20 | 6 | 4.08 | 0.750 | 0.755 | 0.657 | |||||||||
RCA4 | (TG)20 | F: GTA TGA GTC CTT TGT CAG ATA GAG G | 6-FAM | 52 | 2 | 375 | 374–384 | Table farm | 19 | 6 | 3.48 | 0.632 | 0.713 | 0.008 | 0.685 | KP842263 |
R: TGG TAA CAA TGC AGT GTA ATG G | Heidehof | 20 | 5 | 3.68 | 0.850 | 0.729 | 0.667 | |||||||||
RCA5 | (TC)26 | F: GCT CAT GCA TGG TAG GCA ATG G | VIC | 57 | 1 | 311 | 288–312 | Table farm | 18 | 4 | 2.48 | 0.833 | 0.597 | 0.121 | 0.631 | KP842265 |
R: AGA CAT TCA GGT CTC CAC ACT CC | Heidehof | 18 | 7 | 3.17 | 0.667 | 0.685 | 0.506 | |||||||||
RCA6 | (GATA)12 | F: GCA GAG CAG AAT GTC AAC ATC C | PET | 52 | 2 | 258 | 238–262 | Table farm | 19 | 4 | 3.04 | 0.632 | 0.672 | 0.122 | 0.634 | KP842264 |
R: AGT AGC CAT CCC TTT CAA TCC | Heidehof | 20 | 5 | 3.21 | 0.850 | 0.689 | 0.572 | |||||||||
RCA7 | (ATAG)10 | F: GCC TTC ATA GAG CTG ATA TGT TGG | NED | 56 | 1 | 234 | 228–244 | Table farm | 20 | 5 | 3.90 | 0.900 | 0.744 | 0.359 | 0.690 | KP842267 |
R: GAG CCT GCC ATT CTA CAA TCC | Heidehof | 20 | 4 | 3.49 | 0.800 | 0.714 | 0.893 | |||||||||
RDE1 | (TCTA)11 | F: TGT TAC ATC TTG GTC CCT TGA GG | NED | 53 | 1 | 400 | 394–410 | Table farm | 20 | 5 | 3.82 | 0.650 | 0.739 | 0.710 | 0.685 | KP842271 |
R: GCT GCA TAT GGG CTG AGA TAA AC | Heidehof | 20 | 4 | 3.37 | 0.850 | 0.704 | 0.326 | |||||||||
RDE2 | (AC)25 | F: TCA CTC ACT TCT CTC GAC TCC | PET | 53 | 1 | 400 | 387–409 | Table farm | 18 | 7 | 3.10 | 0.500 | 0.677 | 0.106 | 0.642 | KP842269 |
R: AGA CCA CAA CTC TTA ACT CTG C | Heidehof | 20 | 7 | 2.87 | 0.450 | 0.653 | 0.006 | |||||||||
RDE3 | (TC)24 | F: CCT TCT CAG TTA CTA TTA CCT CAC C | NED | 53 | 2 | 336 | 332–388 | Table farm | 19 | 12 | 9.13 | 0.737 | 0.891 | 0.059 | 0.872 | KP842270 |
R: TGC TCT AAC TCC TCA CAC ACC | Heidehof | 20 | 11 | 5.51 | 0.750 | 0.840 | 0.514 |