Table 2 Number of aggregate SNPs in each sample by organism
From: Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing
Sample | B. anthracis | B. pseudomallei | F. tularensis | Y. pestis |
|---|---|---|---|---|
1e6Frag | 673 | 35,871 | 22,930 | 541 |
1e4Frag | 354 | 9725 | 5542 | 372 |
1e3Frag | 65 | 1403 | 3520 | 97 |
1e2Frag | 18 | 135 | 82 | 15 |
1e1Frag | 0 | 0 | 11 | 15 |
1e6Amp | 109 | 2253 | 267 | 54 |
1e4Amp | 45 | 1367 | 195 | 19 |
1e3Amp | 30 | 1133 | 141 | 15 |
1e2Amp | 32 | 963 | 166 | 13 |
1e1Amp | 34 | 1030 | 155 | 16 |
1e0Amp | 17 | 455 | 110 | 4 |
1e1Amp_1e1Tmar | 34 | 950 | 147 | 13 |
1e0Amp_1e0Tmar | 11 | 338 | 107 | 2 |
Total SNPs/genome | 10,004 | 1,024,037 | 98,629 | 8934 |
Predicted SNPs | 33 | 791 | 122 | 34 |