From: Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone
Library | Pre-treatment | Mapped reads (excluding duplicates) | Endogenous contenta (%) | Relative DNA quantityb (%) | Mean fragment length | GC content (total/mapped), % |
---|---|---|---|---|---|---|
(GP1-01) | None | (4896) | (0.7) | (0.4) | (37.7) | (60/37) |
GP1-02 | None | 2969 | 0.4 | 100.0 | 31.9 | 64/37 |
GP1-03 | None | 3409 | 0.4 | 39.0 | 34.1 | 63/38 |
GP1-07 | 0.1% bleach | 28,771 | 3.5 | 4.7 | 36.5 | 60/37 |
GP1-10 | 0.1% bleach | 16,898 | 2.6 | 2.4 | 32.8 | 62/39 |
GP1-08 | 0.5% bleach | 33,467 | 3.8 | 1.3 | 40.1 | 57/38 |
GP1-11 | 0.5% bleach | 23,317 | 3.1 | 0.7 | 36.1 | 59/39 |
GP1-09 | 1.0% bleach | 18,865 | 2.1 | 1.1 | 39.6 | 57/38 |
GP1-12 | 1.0% bleach | 16,590 | 2.1 | 0.7 | 37.8 | 59/39 |
GP1-13 | Pre-digestion | 5734 | 0.7 | 11.7 | 36.6 | 62/39 |
GP1-14 | Pre-digestion | 4925 | 0.7 | 11.3 | 34.3 | 62/39 |