From: A multiplex marker set for microsatellite typing and sexing of sooty terns Onychoprion fuscatus
Locus | Clone name, NCBI accession number/references | Repeat motif | Primer sequence (5′–3′) | Multiplex/fluoro-label (F) | n | A | Observed (expected) allele size range (bp) | HO | HE | P HWE | Est null allele freq. | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ofu1 | Trn17616 | CA(17) | F | TGTTTAAGCAGTAAAGACAAAGCCTAC | 7/NED | 22 | 12 | 202–227 | 0.96 | 0.89 | 0.76 | − 0.05 |
 | LT903723 |  | R | GGTGCGTTTAGAGTGCTTCTTTAG |  |  |  | (211) |  |  |  |  |
Ofu2 | Trn23851 | AC(15) | F | GGCTGTAGCGAGCAGTTAGG | 2/HEX | 22 | 8 | 189–359 | 0.78 | 0.80 | 0.74 | 0.02 |
 | LT903724 |  | R | GAAGCTTGGGTGCAGGTG |  |  |  | (209) |  |  |  |  |
Ofu3 | Trn25452 | CA(16) | F | GGCTGTAGCGAGCAGTTAGG | 5/6-FAM | 23 | 10 | 144–166 | 0.78 | 0.80 | 0.43 | 0.01 |
 | LT903725 |  | R | GAAGCTTGGGTGCAGGTG |  |  |  | (170) |  |  |  |  |
Ofu4 | Trn4256 | AC(18) | F | CCTGTTGCCAAGAAATAAATCTTAC | 5/HEX | 22 | 13 | 141–175 | 1.00 | 0.89 | 0.29 | − 0.07 |
 | LT903726 |  | R | TGAAGAAGCGTGGCTGTG |  |  |  | (150) |  |  |  |  |
Ofu5 | Trn171 | TG(21) | F | TCCCTACTTGACTTTGGAAACATC | 4/6-FAM | 20 | 12 | 86–131 | 0.95 | 0.91 | 0.81 | − 0.04 |
 | LT903727 |  | R | TGTACAACACTGTTCCATCATGC |  |  |  | (103) |  |  |  |  |
Ofu6 | Trn352 | CA(16) | F | GCGTTCGGCATCAAGTTAG | 7/HEX | 22 | 9 | 265–281 | 0.86 | 0.83 | 0.90 | 0.05 |
 | LT903728 |  | R | ATCCCTGCAAAGCACACAG |  |  |  | (282) |  |  |  |  |
Ofu7 | Trn436 | TG(19) | F | TTGCTACAAACCTTGGTTATTGAC | 4/NED | 22 | 10 | 154–184 | 0.77 | 0.85 | 0.23 | 0.04 |
 | LT903729 |  | R | GCAACCTTAGCATTACCTAGCTG |  |  |  | (165) |  |  |  |  |
Ofu8 | Trn640 | GA(15) | F | GGGTTACTGCTGGTCAGAGC | 1/6-FAM | 23 | 14 | 272–328 | 0.91 | 0.85 | 0.63 | − 0.06 |
 | LT903730 |  | R | GCTCTAGGCCAATTTCATCATC |  |  |  | (289) |  |  |  |  |
Ofu9 | Trn643 | TG(20) | F | CTAAGCTGAAATTCCTGAACTGG | 6/6-FAM | 23 | 14 | 174–206 | 0.96 | 0.92 | 0.40 | − 0.03 |
 | LT903731 |  | R | CAACTACAGACATCCCACAAGC |  |  |  | (185) |  |  |  |  |
Ofu10 | Trn16824 | CTT(26) | F | GGAAGGAGCATTCAGTCTGC | 2/NED | 20 | 17 | 132–210 | 1.00 | 0.95 | 0.91 | − 0.04 |
 | LT903732 |  | R | GATGCTCAGATGCTTGCTAGG |  |  |  | (167) |  |  |  |  |
Ofu11 | Trn13992 | TATC(15) | F | AAAGTCTGTCACACATCCAACG | 1/6-FAM | 22 | 8 | 155–203 | 0.77 | 0.72 | 0.53 | − 0.05 |
 | LT903733 |  | R | CACGGTGCCAGTTAATAATGC |  |  |  | (203) |  |  |  |  |
Ofu12 | Trn129 | CT(14) | F | TTAAGCAGAAAGCCAGAGTGG | 3/6-FAM | 22 | 9 | 300–330 | 0.73 | 0.80 | 0.14 | 0.04 |
 | LT903734 |  | R | CTTAGTGTGCTTGGTAAAGACTGAAC |  |  |  | (314) |  |  |  |  |
Ofu13 | Ofu839 | TCCA(14) | F | GAGGCCACCCTTACACCTC | 6/HEX | 22 | 8 | 142–171 | 0.86 | 0.83 | 0.46 | − 0.04 |
 | LT903735 |  | R | AAATGAGCTTGGCTTTACGC |  |  |  | (169) |  |  |  |  |
Ofu14 | Ofu897 | CA(14) | F | GATCTTTCCCAGTAGCACCTATG | 4/HEX | 19 | 7 | 350–365 | 0.79 | 0.82 | 0.63 | − 0.00 |
 | LT903736 |  | R | CCACCTGGCTGGATAACAG |  |  |  | (349) |  |  |  |  |
Ofu15 | Trn191 | CA(14) | F | AAAGAGTCTCCACCTGAAGCAG | 2/6-FAM | 22 | 10 | 333–354 | 0.86 | 0.86 | 0.97 | − 0.02 |
 | LT903737 |  | R | AGCAATATCCCTGGCAGTACC |  |  |  | (340) |  |  |  |  |
Ofu16 | Trn484 | CA(13) | F | TTTCCTCCTGAGACTTGCGTA | 6/6-FAM | 22 | 7 | 314–327 | 0.55 | 0.68 | 0.20 | 0.09 |
 | LT903738 |  | R | AAACCAAACTGGCATCAAATAAGT |  |  |  | (324) |  |  |  |  |
Ofu17 | Trn715 | AC(12) | F | CACCTTATCAAGGGCAATGG | 5/NED | 23 | 10 | 185–207 | 0.74 | 0.87 | 0.11 | 0.08 |
 | LT903739 |  | R | TTGGATGGATAAAGCAAGCTG |  |  |  | (194) |  |  |  |  |
Ofu18 | Trn269 | TC(12) | F | ATCCCTGTCACTCCCATGAC | 1/HEX | 22 | 5 | 298–306 | 0.64 | 0.76 | 0.25 | 0.08 |
 | LT903740 |  | R | TGCACATGGAAAGTTGCTTC |  |  |  | (303) |  |  |  |  |
Ofu19 | Trn15 | AC(12) | F | TTAGCCCTTTACCCAAATGC | 6/6-FAM | 23 | 8 | 94–116 | 0.74 | 0.72 | 0.95 | − 0.03 |
 | LT903741 |  | R | ATTACGTCAGCCTCCTCCAG |  |  |  | (115) |  |  |  |  |
Ofu20 | Trn551 | TTGG(11) | F | CCCAGTGACTCGCTTGCT | 3/HEX | 22 | 9 | 216–262 | 0.86 | 0.86 | 0.35 | − 0.00 |
 | LT903742 |  | R | CTGCAACAGCCTTTCAGTCA |  |  |  | (221) |  |  |  |  |
Ofu21 | Trn121 | GT(11) | F | GGCTTAGAAATACTGCCTTTGC | 5/6-FAM | 22 | 20 | 269–321 | 1.00 | 0.95 | 0.36 | 0.04 |
 | LT903743 |  | R | CTGCTGGTCTGTAAACCATTTATC |  |  |  | (278) |  |  |  |  |
Ofu22 | Trn652 | AC(11) | F | TTTGCAACAGAAACCTTATCCTG | 6/NED | 23 | 6 | 152–164 | 0.70 | 0.70 | 0.35 | − 0.00 |
 | LT903744 |  | R | TATATTGCCTCTGGCCGTTG |  |  |  | (162) |  |  |  |  |
Ofu23 | Trn407 | CCAT(10) | F | CCTGCATATCCCAATATCATCC | 1/HEX | 20 | 10 | 142–183 | 0.80 | 0.86 | 0.53 | 0.02 |
 | LT903745 |  | R | GGGAGGTTCAGGTTGTAATGC |  |  |  | (171) |  |  |  |  |
Ofu24 | Trn442 | ATCT(9) | F | ATGCATGGAAGCTGCTAACC | 3/6-FAM | 22 | 8 | 148–177 | 0.91 | 0.84 | 0.44 | − 0.05 |
 | LT903746 |  | R | ATCTGAGGTGGTCATCATTCTTAAC |  |  |  | (169) |  |  |  |  |
Ofu25 | Trn126 | TTTGT(8) | F | TAGACCAGGCTGCTCAAAGC | 5/HEX | 22 | 10 | 221–226 | 0.73 | 0.73 | 0.42 | 0.00 |
 | LT903747 |  | R | TCCACCTCACCGTACTGGAT |  |  |  | (239) |  |  |  |  |
Ofu26 | Trn825 | AAAC(8) | F | CCTGGGAATAAACAGGAAAGC | 4/6-FAM | 22 | 4 | 189–198 | 0.64 | 0.59 | 0.59 | − 0.05 |
 | LT903748 |  | R | ATCAGCCAAGGTTTGACCAC |  |  |  | (190) |  |  |  |  |
Z002A | [11] | – | – | – | 2/6-FAM | 13 M | 1 | 249 (Z) | 0 | – | – | – |
 |  |  | – | – |  | 10F | 2 | 249 (Z) and 252 (W) | 1.00 | – | – | – |
Z002D | [11] | – | – | – | 1/6-FAM | 13 M | 1 | 127 (Z) | 0 | – | – | – |
 |  |  | – | – |  | 10F | 2 | 122 (W) and 127 (Z) | 1.00 | – | – | – |
Z43B | [12] | – | – | – | 7/6-FAM | 13 M | 1 | 270 (Z) | 0 | – | – | – |
 |  |  | – | – |  | 10F | 2 | 266 (W) and 270 (Z) | 1.00 | – | – | – |