From: Generating long-read sequences using Oxford Nanopore Technology from Diospyros celebica genomic DNA
Label | Name of data file/data set | File types (extension) | Data repository and identifier (DOI or accession number) |
---|---|---|---|
Data file 1 | List of ebony samples and Nanopore Native barcodes | Compressed XLSX file (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13027991.v1 [13] |
Data file 2 | Raw reads statistics and plots (quality score, reads length, reads distribution) | Compressed TXT, PNG and HTML files (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13028069.v1 [14] |
Data file 3 | Polished De novo genome contig assemblies of both assembler | Compressed FASTA files (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13031195.v1 [15] |
Data file 4 | Statistics of corrected contig assemblies with Diospyros celebica chloroplast | Compressed PDF file (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13028177.v1 [16] |
Data file 5 | Statistics of corrected contig assemblies with Diospyros lotus genome | Compressed PDF file (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13028180.v1 [17] |
Data file 6 | Constructed scaffolds from both assembler | Compressed FASTA files (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13031702.v1 [18] |
Data file 7 | Statistics of scaffolds assemblies with Diospyros celebica chloroplast | Compressed PDF file (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13031693.v1 [19] |
Data file 8 | GenBank annotation from scaffolds assemblies | Compressed GB files (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13031708.v1 [20] |
Data file 9 | Annotation visualization from scaffolds assemblies | Compressed JPG files (.zip) | https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13031714.v1 [21] |
Data set 1 | Raw genomic DNA reads (trimmed barcode) | FASTQ files (.fastq) | DNA Data Base of Japan (DRP006615) https://identifiers.org/insdc.sra:DR006615 [22] |